Archaeological features such as pits, privies, cisterns, domestic  architecture, etc., represent localized disturbances to soils that  would otherwise comprise relatively homogeneous deposits (at the  spatial scale relevant to archaeological sites). Features frequently  contain organically enriched fill that is darker in color or different  in texture than the surrounding soils. It is often this visual (and, to  some extent, textural) contrast that permits archaeologists to detect  features during excavation. Similarly, geophysical techniques can  detect subsurface archaeological features that contrast with the  surrounding soils in terms of electrical resistance, magnetic, or other  properties. Factors that can create a geophysical contrast include soil  compaction, particle size, organic content, artifact content, burning,  and moisture retention. Remnant magnetism and magnetic susceptibility  are particularly relevant for magnetic feature detection. Heating iron  oxides (present in many soils) above ca. 400 degrees Centigrade results  in a permanent change (remnant magnetism) in the object’s magnetic  field. Human occupation often introduces burned and organic materials  to the local soils and increases magnetic susceptibility. In general,  any human action that involves the localized disturbance of the soil is  potentially detectable by geophysical techniques. Localized  disturbances associated with tree roots, rodents, and other natural  phenomena, as well as recent cultural activities (vehicle ruts, plow  furrows, etc.) are also often detectable.
         In a geophysical map, cultural features (as well as other discrete  disturbances) may appear as anomalies, i.e., spatially discrete areas  characterized by geophysical values that differ from those of the  surrounding area. Prehistoric features such as pits and hearths are  typically characterized by a very low contrast with the surrounding  soil matrix. Historic features frequently contain metal artifacts and  architectural debris (brick, mortar, stone footings, etc.) and thus  typically exhibit a stronger contrast with their surroundings.
         Several other factors can make it difficult to identify anomalies  associated with low contrast features. All geophysical surveys are to  some extent affected by noise, a seemingly random component in the data  attributable to the instrument itself, the operator’s field technique,  or variability in the site’s soil, rocks, etc. Clutter refers to  non-archaeological, non-random, discrete phenomena that complicate  feature detection. Clutter can include plow furrows, rocks, tree roots,  rodent burrows, and modern metallic debris. At some sites, anomalies  associated with clutter can be stronger and more numerous than  anomalies related to cultural features.
-- An excerpt from Dr. Michael Hargrave's report of the 2004-2006 Geophysical Surveys at New Philadelphia.

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